Multiscale modelling of biomolecular corona formation on metallic surfaces

• Parinaz Mosaddeghi Amini,
• Ian Rouse,
• Julia Subbotina and
• Vladimir Lobaskin

Beilstein J. Nanotechnol. 2024, 15, 215–229, doi:10.3762/bjnano.15.21

• the proteins. Each heatmap is accompanied by a 3D representation of the protein on the NP surface, with the AAs closest to the NP’s surface marked. The AAs that are most likely to make contact with the metal surfaces, according to analysis, are LYS, TYR, PHE, GLU, ARG, and ASP. The rankings of protein

Two-dimensional molecular networks at the solid/liquid interface and the role of alkyl chains in their building blocks

• Suyi Liu,
• Yasuo Norikane and
• Yoshihiro Kikkawa

Beilstein J. Nanotechnol. 2023, 14, 872–892, doi:10.3762/bjnano.14.72

• flat conducting substrates, such as metal surfaces and highly oriented pyrolytic graphite (HOPG), under ultrahigh vacuum (UHV) conditions, at solid/air or solid/liquid interfaces [23][24][25][26][27][28]. Although UHV-STM offers high-resolution imaging, it requires large, complex, and expensive

Molecular nanoarchitectonics: unification of nanotechnology and molecular/materials science

• Katsuhiko Ariga

Beilstein J. Nanotechnol. 2023, 14, 434–453, doi:10.3762/bjnano.14.35

• substrate. This process resulted in the formation of heterowires in which the polymer initially formed on the substrate was linked to another type of thiophene polymer that was growing. In this way, nanoarchitectonics of conjugated polymers can be obtained on metal surfaces by multistep electrochemical

From a free electron gas to confined states: A mixed island of PTCDA and copper phthalocyanine on Ag(111)

• Alfred J. Weymouth,
• Emily Roche and
• Franz J. Giessibl

Beilstein J. Nanotechnol. 2022, 13, 1572–1577, doi:10.3762/bjnano.13.131

• coverage, lies flat on metal surfaces. Submonolayer coverage of PTCDA on Ag(111) is known to form islands with a herringbone reconstruction [3][4]. These islands are hosts to an interface state that acts like a free-electron gas [5]. This interface state has been observed with two-photon photoelectron

• Information File 1. A natural complement to PTCDA is copper phthalocyanine (CuPc) for several reasons: First, CuPc and PTCDA together can form an organic light-emitting diode with PTCDA as the acceptor [14]. Second, CuPc [15] and PTCDA both lie flat on metal surfaces at submonolayer coverage, enabling high

• -precision STM and atomic force microscopy (AFM) scanning. Third, CuPc and PTCDA are known to form commensurate phases on flat metal surfaces. In particular, they have been well studied at different stoichiometries on Ag(111) [16]. Henneke and co-workers showed that more than 0.15 ML of PTCDA in addition to

Laser-processed antiadhesive bionic combs for handling nanofibers inspired by nanostructures on the legs of cribellate spiders

• Sebastian Lifka,
• Kristóf Harsányi,
• Erich Baumgartner,
• Lukas Pichler,
• Dariya Baiko,
• Karsten Wasmuth,
• Johannes Heitz,
• Marco Meyer,
• Anna-Christin Joel,
• Jörn Bonse and
• Werner Baumgartner

Beilstein J. Nanotechnol. 2022, 13, 1268–1283, doi:10.3762/bjnano.13.105

• sticking of an artificially nonwoven of nanofibers. According to the theoretical prediction, a technical analogon of the nanoripples was produced by ultrashort pulse laser processing on different technically relevant metal surfaces in the form of so-called laser-induced periodic surface structures (LIPSS

• structures (LIPSS) [29] represent a technical analogon of the nanoripples found on the calamistrum of the spider. They were produced by ultrashort pulse laser processing on different technically relevant metal surfaces (aluminium alloy, steel, and titanium alloy) according to theoretical predictions

• amplitude a and λ is too low, the surface becomes even more adhesive for nanofibers than flat surfaces. Figure 5 shows the above-described effect for a fiber radius R = 15 nm and different characteristic lengths λ. Design and test of LIPSS-covered metal surfaces that are anti-adhesive for electrospun PA-6

Design of surface nanostructures for chirality sensing based on quartz crystal microbalance

• Yinglin Ma,
• Xiangyun Xiao and
• Qingmin Ji

Beilstein J. Nanotechnol. 2022, 13, 1201–1219, doi:10.3762/bjnano.13.100

• QCM system, which include organic molecules, supermolecular assemblies, inorganic nanostructures, and metal surfaces. The sensing mechanisms based on these surface nanostructures and the related potentials for chiral detection by the QCM system are also summarized. Keywords: assembled nanostructure

• that metal surfaces may be an ideal platform to study the dynamic chiral recognition process. The adsorption orientations of the two enantiomers may have clear differences on the chiral metal surface, which makes the binding energy of enantiomers different on the crystalline surface. Dong and Wang et

• strengthened. This work presented the great potential of bare metal surfaces as an effective platform for chirality detection. Metals are not only more stable than organic materials in various usage conditions, but also have excellent optical, electrical, and magnetic properties. They may facilitate the design

Effects of focused electron beam irradiation parameters on direct nanostructure formation on Ag surfaces

• Jānis Sniķeris,
• Vjačeslavs Gerbreders,
• Andrejs Bulanovs and
• Ēriks Sļedevskis

Beilstein J. Nanotechnol. 2022, 13, 1004–1010, doi:10.3762/bjnano.13.87

• plasmonics, due to their ability to absorb or emit light at frequencies which depend on their size and shape. It was recently shown that irradiation by a focused electron beam can promote the growth of nanostructures on metal surfaces and the height of these structures depends on the duration of the

• nanopatterning of metal surfaces, but it is a complicated and expensive multistep process [8]. Electron beam induced deposition (EBID) is a direct-write lithography technique, which is capable of creating 2D and free-standing 3D nanostructures by using electron irradiation to dissociate volatile precursor

• . However, some studies suggest that this process may not always be so simple. Ueda and Yoshimura [27] reported the fabrication of free-standing nanowires on various metal surfaces (Al, Ag, Au, Cu, Pt, Ta, Ti, and W) via EBID with pump oil (hydrocarbons) as a precursor. It was observed that the substrate

Self-assembly of C₆₀ on a ZnTPP/Fe(001)–p(1 × 1)O substrate: observation of a quasi-freestanding C₆₀ monolayer

• Guglielmo Albani,
• Michele Capra,
• Alessandro Lodesani,
• Alberto Calloni,
• Gianlorenzo Bussetti,
• Marco Finazzi,
• Franco Ciccacci,
• Alberto Brambilla,
• Lamberto Duò and
• Andrea Picone

Beilstein J. Nanotechnol. 2022, 13, 857–864, doi:10.3762/bjnano.13.76

• fullerene films stabilized directly on metal surfaces. Our results unveil a model system that could be useful in applications in which a quasi-freestanding monolayer of C60 interfaced with a metallic electrode is required. Keywords: fullerene; scanning tunneling microscopy; ultraviolet photoemission

Zinc oxide nanostructures for fluorescence and Raman signal enhancement: a review

• Ioana Marica,
• Fran Nekvapil,
• Maria Ștefan,
• Cosmin Farcău and
• Alexandra Falamaș

Beilstein J. Nanotechnol. 2022, 13, 472–490, doi:10.3762/bjnano.13.40

• , due to the energy and electron transfer from plasmon-resonant metal surfaces to the adjacent semiconductor. Such hybrid materials have been proposed for medical and pharmaceutical applications, catalysis, and electronics [88]. The photoluminescence emission of ZnO nanoparticles has been exploited in

Relationship between corrosion and nanoscale friction on a metallic glass

• Haoran Ma and
• Roland Bennewitz

Beilstein J. Nanotechnol. 2022, 13, 236–244, doi:10.3762/bjnano.13.18

• films form on most metal surfaces and act as a barrier to the corrosive environment, thus impeding further corrosion. The corrosion properties of MGs, for example, the ability to passivate and to remain in the passive state in corrosive aqueous solutions, have been addressed in many studies using

Molecular assemblies on surfaces: towards physical and electronic decoupling of organic molecules

• Sabine Maier and
• Meike Stöhr

Beilstein J. Nanotechnol. 2021, 12, 950–956, doi:10.3762/bjnano.12.71

• layer; molecular self-assembly; scanning probe microscopy; surface science; Over the past two decades, organic molecules adsorbed on atomically defined metal surfaces have been intensively studied to obtain an in-depth understanding of their self-assembly behavior, on-surface reactivity, as well as

Modification of a SERS-active Ag surface to promote adsorption of charged analytes: effect of Cu²⁺ ions

• Bahdan V. Ranishenka,
• Andrei Yu. Panarin,
• Irina A. Chelnokova,
• Sergei N. Terekhov,
• Peter Mojzes and
• Vadim V. Shmanai

Beilstein J. Nanotechnol. 2021, 12, 902–912, doi:10.3762/bjnano.12.67

• detection is to localize the molecules of interest at the plasmonic surface but at a proper distance (2–4 nm) [2][4]. It is a common practice to demonstrate the SERS effectivity of a SERS-active substrate by using analytes that are strongly adsorbed at the plasmonic metal surfaces and located at the “hot

Nanogenerator-based self-powered sensors for data collection

• Yicheng Shao,
• Maoliang Shen,
• Yuankai Zhou,
• Xin Cui,
• Lijie Li and
• Yan Zhang

Beilstein J. Nanotechnol. 2021, 12, 680–693, doi:10.3762/bjnano.12.54

• for the design of sterilization and algae removal [72], wastewater treatment [73][74], and electrochemical corrosion protection of metal surfaces and battery cathodes [56][75][76]. TENG-based special flexible pressure sensors can be placed on the surface of human skin to monitor the physiological

Influence of electrospray deposition on C₆₀ molecular assemblies

• Antoine Hinaut,
• Sebastian Scherb,
• Sara Freund,
• Zhao Liu,
• Thilo Glatzel and
• Ernst Meyer

Beilstein J. Nanotechnol. 2021, 12, 552–558, doi:10.3762/bjnano.12.45

• different surfaces and compare, for sub-monolayer coverages, the influence of the deposition method on the formation of molecular assemblies. Whereas the island location is the main difference for metal surfaces, we observe for alkali halide and metal oxide substrates that the high-vacuum electrospray

• materials, ranging from metal surfaces [5][6][7][8][9][10][11][12][13], over metal oxides [14] and insulating substrates [15] to graphene monolayers on metals [16]. In HV-ESD-based devices, a solution containing the molecules reaches an emitter located in front of the entrance capillary, as shown in Figure

Surface-enhanced Raman scattering of water in aqueous dispersions of silver nanoparticles

• Paulina Filipczak,
• Krzysztof Hałagan,
• Jacek Ulański and
• Marcin Kozanecki

Beilstein J. Nanotechnol. 2021, 12, 497–506, doi:10.3762/bjnano.12.40

• metal surfaces, which is very different in comparison to bulk water [24]. It was explained that the ordering of water molecules near to AgNPs is due to the electrostatic interactions between water and AgNPs. Some simulation studies also reported the enhancement of hydrogen bonds in the water structure

Interface interaction of transition metal phthalocyanines with strontium titanate (100)

• Reimer Karstens,
• Thomas Chassé and
• Heiko Peisert

Beilstein J. Nanotechnol. 2021, 12, 485–496, doi:10.3762/bjnano.12.39

• . It seems that, generally, such oxidic surfaces are more prone to support the cleavage of intramolecular C–F bonds in comparison to metal surfaces. Bulk crystal structures (side views) of: (a) TiO2-terminated strontium titanate (100) and (b) SrO-terminated strontium titanate (100) (Ti4+: light blue

Reconstruction of a 2D layer of KBr on Ir(111) and electromechanical alteration by graphene

• Zhao Liu,
• Antoine Hinaut,
• Stefan Peeters,
• Sebastian Scherb,
• Ernst Meyer,
• Maria Clelia Righi and
• Thilo Glatzel

Beilstein J. Nanotechnol. 2021, 12, 432–439, doi:10.3762/bjnano.12.35

• , resulting in quasi free-standing graphene layers [18]. Alkali halide layers are frequently used as decoupling layers in surface science [19][20][21][22]. They are reported to form single- or double-layer islands with a typical cubic structure on single-crystalline transition metal surfaces [23][24

• contrast, on hexagonal (111) oriented metal surfaces, alkali halides were reported to arrange in cubic islands [31][32][33]. Sometimes, they exhibit a moiré pattern, for example, as a result of the incommensurate growth in the system of NaCl/Cu(111) [34]. Furthermore, considering the interface of alkali

Extended iron phthalocyanine islands self-assembled on a Ge(001):H surface

• Rafal Zuzak,
• Marek Szymonski and
• Szymon Godlewski

Beilstein J. Nanotechnol. 2021, 12, 232–241, doi:10.3762/bjnano.12.19

• transistors [24][41][42]. Moreover, they are ideal candidates to study the influence of the interaction between the central metal atom and the surrounding ligands on the overall properties. Commonly, metal phthalocyanines and their derivatives have been investigated on crystalline metal surfaces [43][44][45

The influence of an interfacial hBN layer on the fluorescence of an organic molecule

• Christine Brülke,
• Oliver Bauer and
• Moritz M. Sokolowski

Beilstein J. Nanotechnol. 2020, 11, 1663–1684, doi:10.3762/bjnano.11.149

• ) and the metal surfaces Cu(111) and Ag(111) can be linked to the different bonding of PTCDA to the surfaces. In UPS experiments [33], a chemisorptive interaction of the metal surfaces with the PTCDA molecule was found, leading to a (partial) filling of the former LUMO on Ag(111) and Cu(111). On PTCDA

• primarily observed on rough/nanostructured rather than on flat metal surfaces [45], the SERS effect is expected to be larger for molecules located in proximity to surface defects. Thus, at surface positions with a higher defect density, the Raman intensities are expected to be higher. The relevance of the

Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization

• Jari Järvi,
• Patrick Rinke and
• Milica Todorović

Beilstein J. Nanotechnol. 2020, 11, 1577–1589, doi:10.3762/bjnano.11.140

• with van der Waals (vdW) corrections employing the vdWsurf parametrization [45] of the Tkatchenko–Scheffler method [46]. Previous work found that PBE + vdWsurf adequately describes organic molecules on metal surfaces [45][47][48]. Our converged settings employ tier-1 basis sets with light grid settings

Adsorption and self-assembly of porphyrins on ultrathin CoO films on Ir(100)

• Feifei Xiang,
• Tobias Schmitt,
• Marco Raschmann and
• M. Alexander Schneider

Beilstein J. Nanotechnol. 2020, 11, 1516–1524, doi:10.3762/bjnano.11.134

• methods has been very successful in recent decades, but it mainly focused on metal or semi-metal surfaces. The research revealed numerous ways to steer self-assembly and on-surface reactions by a careful choice of functionalization and substrates [2]. Despite its importance for applications, the

• surfaces. It was shown that free-base (2H) or metalated DPP molecules assemble in two-dimensional or linear structures on metal surfaces [22][23] and that on-surface dehydrogenative polymerization reactions may be induced [24]. DPP molecules interact via the phenyl rings and the molecular macrocycle. In

• involved aromatic systems. Similar values are found on the metal surfaces. The details of these compact structures on different substrates are therefore regulated by the substrate lattice. Furthermore, similar to what is observed for many metal substrates, the central metal ion of the molecule is not

Self-assembly and spectroscopic fingerprints of photoactive pyrenyl tectons on hBN/Cu(111)

• Domenik M. Zimmermann,
• Knud Seufert,
• Luka Ðorđević,
• Tobias Hoh,
• Sushobhan Joshi,
• Tomas Marangoni,
• Davide Bonifazi and
• Willi Auwärter

Beilstein J. Nanotechnol. 2020, 11, 1470–1483, doi:10.3762/bjnano.11.130

• ][48][49][50][51][52][53][54]. With prominent fluorescence properties, pyrene is often considered the "fruitfly of photochemists", and several materials have been prepared for applications in optoelectronic devices and organic electronics [47]. On metal surfaces under ultrahigh vacuum (UHV

Impact of fluorination on interface energetics and growth of pentacene on Ag(111)

• Qi Wang,
• Meng-Ting Chen,
• Antoni Franco-Cañellas,
• Bin Shen,
• Thomas Geiger,
• Holger F. Bettinger,
• Frank Schreiber,
• Ingo Salzmann,
• Alexander Gerlach and
• Steffen Duhm

Beilstein J. Nanotechnol. 2020, 11, 1361–1370, doi:10.3762/bjnano.11.120

• intramolecular interactions [18]. Overall, the influence of perfluorination on the multilayer growth and on the interfacial coupling of pentacene on clean metal surfaces is understood to a large extent. However, the impact of partial fluorination is less well studied, and thus we explored thin films of partially

• [60] and vacuum-sublimed on clean metal surfaces (prepared by repeated Ar+ ion sputtering and annealing cycles [up to 550 °C]), with deposition rates of about 0.5 Å/min. The film mass thickness was monitored with a quartz crystal microbalance (QCM) near the sample, and a nominal thickness of 4 Å is

Scanning tunneling microscopy and spectroscopy of rubrene on clean and graphene-covered metal surfaces

• Karl Rothe,
• Alexander Mehler,
• Nicolas Néel and
• Jörg Kröger

Beilstein J. Nanotechnol. 2020, 11, 1157–1167, doi:10.3762/bjnano.11.100

• are due to different molecular vibrational quanta with distinct Huang–Rhys factors. Keywords: graphene; metal surfaces; molecular superstructures; rubrene; scanning tunneling microscopy; scanning tunneling spectroscopy; vibronic states; Introduction Two-dimensional materials are emerging as

• monatomically thin buffer layers (BLs) on metal surfaces, i.e., as intermediate films that efficiently reduce the hybridization of an adsorbate with the metallic substrate. The minimization of the adsorbate–substrate coupling is motivated by the desire to preserve genuine properties of the free atom or molecule

• functions are indeed present on the moiré lattice of graphene. For instance, graphene-covered Ir(111), which may serve as a reference for graphene on Pt(111) owing to the comparably low hybridization of graphene with the two metal surfaces, exhibits work function changes of the order of 0.1 eV [47]. In the

Monolayers of MoS₂ on Ag(111) as decoupling layers for organic molecules: resolution of electronic and vibronic states of TCNQ

• Asieh Yousofnejad,
• Gaël Reecht,
• Nils Krane,
• Christian Lotze and
• Katharina J. Franke

Beilstein J. Nanotechnol. 2020, 11, 1062–1071, doi:10.3762/bjnano.11.91

• Asieh Yousofnejad Gael Reecht Nils Krane Christian Lotze Katharina J. Franke Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany 10.3762/bjnano.11.91 Abstract The electronic structure of molecules on metal surfaces is largely determined by hybridization and

• the modes with strong electron–phonon coupling. Keywords: decoupling layer; molybdenum disulfide (MoS2); scanning tunneling microscopy, tetracyanoquinodimethane (TCNQ); vibronic states; Introduction When molecules are adsorbed on metal surfaces, their electronic states are strongly perturbed by

• of decoupling layers made use of the in situ fabrication of single layers of transition metal dichalcogenides on metal surfaces. A monolayer of MoS2 on Au(111) provided very narrow molecular resonances, close to the thermal resolution limit at 4.6 K [26]. The exquisite decoupling efficiency has been